Patrik Edén
Senior lecturer
Publications
Displaying of publications. Sorted by year, then title.
Facilitating clinically relevant skin tumor diagnostics with spectroscopy-driven machine learning
Emil Andersson, Jenny Hult, Carl Troein, Magne Stridh, Benjamin Sjögren, et al.
(2024) iScience, 27
Journal articleA community effort to identify and correct mislabeled samples in proteogenomic studies
Seungyeul Yoo, Zhiao Shi, Bo Wen, SoonJye Kho, Renke Pan, et al.
(2021) Patterns, 2
Journal articleEstablishing strong imputation performance of a denoising autoencoder in a wide range of missing data problems
Najmeh Abiri, Björn Linse, Patrik Edén, Mattias Ohlsson
(2019) Neurocomputing, 365 p.137-146
Journal articleArtificial neural network models to predict nodal status in clinically node-negative breast cancer
Looket Dihge, Mattias Ohlsson, Patrik Edén, Pär Ola Bendahl, Lisa Rydén
(2019) BMC Cancer, 19
Journal articleA multicenter study investigating the molecular fingerprint of psychological resilience in breast cancer patients : Study protocol of the SCAN-B resilience study
Ulrika Axelsson, Lisa Rydén, Per Johnsson, Patrik Edén, Johanna Månsson, et al.
(2018) BMC Cancer, 18
Journal articleIdentification and validation of single-sample breast cancer radiosensitivity gene expression predictors
Martin Sjöström, Johan Staaf, Patrik Edén, Fredrik Wärnberg, Jonas Bergh, et al.
(2018) Breast Cancer Research, 20
Journal articleSingle-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis.
Cristina Pina, José Teles, Cristina Fugazza, Gillian May, Dapeng Wang, et al.
(2015) Cell Reports, 11 p.1503-1510
Journal articleFinding Risk Groups by Optimizing Artificial Neural Networks on the Area under the Survival Curve Using Genetic Algorithms
Jonas Kalderstam, Patrik Edén, Mattias Ohlsson
(2015) PLoS ONE, 10
Journal articleSOX11 and TP53 add prognostic information to MIPI in a homogenously treated cohort of mantle cell lymphoma - a Nordic Lymphoma Group study.
Lena Nordström, Sandra Sernbo, Patrik Eden, Kirsten Grønbaek, Arne Kolstad, et al.
(2014) British Journal of Haematology, 166 p.98-108
Journal articleTranscriptional regulation of lineage commitment - a stochastic model of cell fate decisions.
José Teles, Cristina Pina, Patrik Edén, Mattias Ohlsson, Tariq Enver, et al.
(2013) PLoS Computational Biology, 9
Journal articleTraining artificial neural networks directly on the concordance index for censored data using genetic algorithms.
Jonas Kalderstam, Patrik Edén, Pär-Ola Bendahl, Carina Forsare, Mårten Fernö, et al.
(2013) Artificial Intelligence in Medicine, 58 p.125-132
Journal articleEnsembles of genetically trained artificial neural networks for survival analysis
Jonas Kalderstam, Patrik Edén, Mattias Ohlsson
(2013) ESANN 2013 proceedings, 21st European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning , p.333-338
Conference paperGene expression profiling indicates that immunohistochemical expression of CD40 is a marker of an inflammatory reaction in the tumor stroma of diffuse large B-cell lymphoma
Karin Fjordén, Patrick Joost, Mats Ehinger, Patrik Edén, Mats Jerkeman, et al.
(2012) Leukemia & Lymphoma, 53 p.1764-1768
Journal articleIdentification of uniquely expressed transcription factors in highly purified B-cell lymphoma samples.
Ulrika Andreasson, Patrik Edén, Carsten Peterson, Carl-Magnus Högerkorp, Mats Jerkeman, et al.
(2010) American Journal of Hematology, 85 p.418-425
Journal articleExpression of P190 and P210 BCR/ABL1 in normal human CD34(+) cells induces similar gene expression profiles and results in a STAT5-dependent expansion of the erythroid lineage
Marcus Järås, Petra Johnels, Helena Ågerstam, Carin Lassen, Marianne Rissler, et al.
(2009) Experimental Hematology, 37 p.367-375
Journal articleAccounting for one-channel depletion improves missing value imputation in 2-dye microarray data
Cecilia Ritz, Patrik Edén
(2008) BMC Genomics, 9
Journal articleGenes associated with the tumour microenvironment are differentially expressed in cured versus primary chemotherapy-refractory diffuse large B-cell lymphoma.
Johan Linderoth, Patrik Edén, Mats Ehinger, Jeanette Valcich, Mats Jerkeman, et al.
(2008) British Journal of Haematology, 141 p.423-432
Journal articleThe molecular signature of MDS stem cells supports a stem-cell origin of 5q - myelodysplastic syndromes
Lars Nilsson, Patrik Edén, Eleonor Olsson, Robert Månsson, Ingbritt Åstrand-Grundström, et al.
(2007) Blood, 110 p.3005-3014
Journal articleDiagnostic and prognostic gene expression signatures in 177 soft tissue sarcomas: hypoxia-induced transcription profile signifies metastatic potential.
Princy Francis, Heidi Maria Namlos, Christoph Müller, Patrik Edén, Josefin Fernebro, et al.
(2007) BMC Genomics, 8
Journal articleMicroarray-based classification of a consecutive series of 121 childhood acute leukemias: prediction of leukemic and genetic subtype as well as of minimal residual disease status.
Anna Andersson, Cecilia Ritz, David Lindgren, Patrik Edén, Carin Lassen, et al.
(2007) Leukemia, 21 p.1198-1203
Journal articleEstrogen receptor beta expression is associated with tamoxifen response in ER alpha-negative breast carcinoma
Sofia Gruvberger, Pär-Ola Bendahl, Lao H Saal, Mervi Laakso, Cecilia Hegardt, et al.
(2007) Clinical Cancer Research, 13 p.1987-1994
Journal articleGene expression profiles relate to SS18/SSX fusion type in synovial sarcoma
Josefin Fernebro, Princy Francis, Patrik Edén, Åke Borg, Ioannis Panagopoulos, et al.
(2006) International Journal of Cancer, 118 p.1165-1172
Journal articleGene expression profilers and conventional clinical markers to predict distant recurrences for premenopausal breast cancer patients after adjuvant chemotherapy.
Emma Niméus, Cecilia Ritz, Patrik Edén, Anders Johnsson, Mattias Ohlsson, et al.
(2006) European Journal of Cancer, 42 p.2729-2737
Journal articlePulsatile blood flow, shear force, energy dissipation and Murray's Law
Page R Painter, Patrik Edén, Hans-Uno Bengtsson
(2006) Theoretical Biology Medical Modelling, 3
Journal articleMolecular signatures in childhood acute leukemia and their correlations to expression patterns in normal hematopoietic subpopulations.
Anna Andersson, Tor Olofsson, David Lindgren, Björn Nilsson, Cecilia Ritz, et al.
(2005) Proceedings of the National Academy of Sciences, 102 p.19069-19074
Journal articleIntratumor versus intertumor heterogeneity in gene expression profiles of soft-tissue sarcomas.
Princy Francis, Josefin Fernebro, Patrik Edén, Anna Laurell, Anders Rydholm, et al.
(2005) Genes, Chromosomes and Cancer, 43 p.302-308
Journal articleGene expression profiling of leukemic cell lines reveals conserved molecular signatures among subtypes with specific genetic aberrations
Anna Andersson, Patrik Edén, David Lindgren, Jens Nilsson, Carin Lassen, et al.
(2005) Leukemia, 19 p.1042-1050
Journal articlePredicting continuous values of prognostic markers in breast cancer from microarray gene expression profiles.
Sofia Gruvberger, Patrik Edén, Markus Ringnér, Bo Baldetorp, Gunilla Chebil, et al.
(2004) Molecular Cancer Therapeutics, 3 p.161-168
Journal article"Good Old" clinical markers have similar power in breast cancer prognosis as microarray gene expression profilers.
Patrik Edén, Cecilia Ritz, Carsten Rose, Mårten Fernö, Carsten Peterson
(2004) European Journal of Cancer, 40 p.1837-1841
Journal articleComparing Functional Annotation Analyses with Catmap
Thomas Breslin, Patrik Edén, Morten Krogh
(2004) BMC Bioinformatics, 5 p.193-193
Journal articleExpression profiling to predict outcome in breast cancer: the influence of sample selection
Sofia Gruvberger, Markus Ringnér, Patrik Edén, Åke Borg, Mårten Fernö, et al.
(2003) Breast Cancer Research, 5 p.23-26
Journal articleA simple model for the arterial system
Hans-Uno Bengtsson, Patrik Edén
(2003) Journal of Theoretical Biology, 221 p.437-443
Journal articleClassification of Expression Patterns Using Artificial Neural Networks
Markus Ringnér, Patrik Edén, Peter Johansson
(2003) A Practical Approach to Microarray Data Analysis , p.201-215
Book chapterHigh-energy-physics event generation with PYTHIA 6.1
Torbjörn Sjöstrand, Patrik Edén, Christer Friberg, Leif Lönnblad, Gabriela Miu, et al.
(2001) Computer Physics Communications, 135 p.238-259
Journal articleOn particle multiplicities distribution in three-jet events
Gösta Gustafson, Patrik Edén, Valery Khoze
(1999) European Physical Journal C, 11 p.345-350
Journal articleUsing two jet events to understand hadronization
Gösta Gustafson, Patrik Edén
(1999) European Physical Journal C, 8 p.435-445
Journal articleEnergy and virtuality scale dependence in quark and gluon jets
Gösta Gustafson, Patrik Edén
(1998) Journal of High Energy Physics, 1998
Journal articleBaryon production in the string fragmentation picture
Gösta Gustafson, Patrik Edén
(1997) Zeitschrift für Physik C Particles and Fields, 75 p.41-49
Journal article